Ciider transcription factor
WebTranscription uses one of the two exposed DNA strands as a template; this strand is called the template strand.The RNA product is complementary to the template strand and is almost identical to the other DNA strand, … WebIdentification of transcription factors (TFs) is a starting point for the analysis of transcriptional regulatory systems of organisms. Here, we report the development of DeepTFactor, a deep learning-based tool that predicts TFs using protein sequences as inputs. We interpreted the reasoning process of DeepTFactor, confirming that …
Ciider transcription factor
Did you know?
http://cistrome.org/ WebAn integrative plant transcription factor database that provides a web interface to access large (close to complete) sets of transcription factors of several plant species, currently encompassing Arabidopsis thaliana (thale cress), Populus trichocarpa (poplar), Oryza sativa (rice), Chlamydomonas reinhardtii and Ostreococcus tauri. ...
WebSep 4, 2024 · Marinescu VD, Kohane IS, Riva A. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple … WebCiiiDER: A tool for predicting and analysing transcription factor binding sites The availability of large amounts of high-throughput genomic, transcriptomic and epigenomic …
WebApr 4, 2024 · CiiiDER predicts transcription factor binding sites (TFBSs) across regulatory regions of interest, such as promoters and enhancers derived from any species. It can … WebNov 27, 2024 · Cister - Cis-element Cluster Finder. open in new window. COMPEL - database on composite regulatory elements affecting gene transcription in eukaryotes. open in new window. RSA-tools - Regulatory Sequence Analysis tools - Search a pattern (string description) within all upstream or downstream regions of a genome.
WebMar 17, 2015 · In this network, 14 transcription factors, including Myc, coordinately upregulate gene expression of anabolic processes such as nucleotide synthesis, transcription, and translation, consistent ...
WebWelcome to Cistrome. The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale, also known as the in vivo genome-wide location of transcription factor binding-sites or histone modifications".Here we build integrative analysis pipelines (Cistrome) to help experimental biologists, and conduct efficient data … song jive bunny youtubeWebFeb 8, 2024 · Transcription factors (TFs) recognize specific DNA sequences to control chromatin and transcription, forming a complex system that guides expression of the genome. Despite keen interest in understanding how TFs control gene expression, it remains challenging to determine how the precise genomic binding sites of TFs are … song ji hyo short haircutWebJan 1, 2006 · The DBD (www.transcriptionfactor.org) consists of predicted transcription factor repertoires for 150 completely sequenced genomes, their domain assignments … smallest compound bow on the marketWebOct 1, 2010 · The database contains 189,933 interactions, manually extracted from 87 publications, describing the binding of 92 transcription factors to 31,932 target genes. We used the database to analyze mRNA expression data where we perform gene-list enrichment analysis using the ChIP-X database as the prior biological knowledge gene … smallest compressor mini fridgehttp://ciiider.erc.monash.edu/ song jitterbug by whamWebNational Center for Biotechnology Information song jocelynhttp://ciiider.erc.monash.edu/#:~:text=CiiiDER%20is%20a%20user-friendly%20tool%20for%20predicting%20and,are%20significantly%20enriched%20and%20display%20the%20results%20interactively. song jiyang the untamed